PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G108400.1
Common NameB456_008G108400, LOC105762415
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 190aa    MW: 20870.4 Da    PI: 9.0228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G108400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1985136256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+++AeIrdp  ng   r++lg++ t+e+Aa a+++a+ k++g+
  Gorai.008G108400.1  85 HYRGVRRRP-WGKYAAEIRDPDRNG--LRVWLGTYETPEDAALAYDKAAFKIRGA 136
                         6********.**********96676..*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.89485143IPR001471AP2/ERF domain
CDDcd000181.39E-3085145No hitNo description
PfamPF008476.4E-1385135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-3285144IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-2385144IPR016177DNA-binding domain
SMARTSM003803.5E-3785149IPR001471AP2/ERF domain
PRINTSPR003671.3E-138697IPR001471AP2/ERF domain
PRINTSPR003671.3E-13125145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MWVNEIKSES DLASLDIISQ NLLADDFEAS LTSSAMASSF NDPFFCSFTS LLSSTKPEEA  60
EEEPPPEASQ AEAAATVAAR VKTVHYRGVR RRPWGKYAAE IRDPDRNGLR VWLGTYETPE  120
DAALAYDKAA FKIRGAKAKL NFPHLIGSSK VEPIRVGPRR RSPEQSSSSS FSTVNTPVSS  180
MSKRKKRDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3082150270ATERF1
3gcc_A1e-3082150270ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435677.11e-137PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K12e-50ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A0D2PSK11e-137A0A0D2PSK1_G
STRINGAT2G44840.15e-48(Arabidopsis thaliana)
STRINGscaffold_403422.18e-48(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-45ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]